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May 5, 2019 16:30:53 GMT
Post by phylilintoolbgen on May 5, 2019 16:30:53 GMT
Main category \ Education
Sub category \ Science
Developer \ Hunt Mountain Software
Filesize \ 4198
Title \ Analytic Rarefaction
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☆ v_2.2.1_Analytic_Rarefaction.zip
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Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 1990;215(3):403–410. [PubMed]
The program will then list for a range of rarified sample sizes (n) the expected number of species (E) and the variance of the expected number of species (Var). It will also list the upper and lower 95% and 99% confidence limits. The upper and lower 95% confidence limits are calculated as E +/- 1.96 * sqrt(Var); the 99% confidence limits are calculated as E +/- 2.58 * sqrt(Var).
We are thankful to members of the Institut für Populationsgenetik and Jens Boenigk for helpful discussion. This work was supported by FWF grants (No. P19467-B11) to CS.
Observed number of species in the Second Sample
2. Filtering sequences with ambiguities
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Colwell et al. (2004)
As an option, you can tell EstimateS to add samples in the order they appear in your matrix and compute the estimators and indexes only once, for the sample ordering in the input matrix. (You can also use this option if expected species accumulation curves and/or Coleman curves are all you need.)
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